Gene: AT5G52250

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G52250
  • Transcript Identifier AT5G52250.1
  • Gene Type Coding gene
  • Location Chr5 : 21216898-21218055 : positive

Gene Family Information

  • ID HOM05D000684
  • #Genes/#Species 835/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G52250.1
  • symbol RUP1
  • Alias EFO1,EARLY FLOWERING BY OVEREXPRESSION 1
  • full_name REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1
  • uniprot Q9LTJ6

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23730.1); Has 19305 Blast hits to 12811 proteins in 562 species: Archae - 16; Bacteria - 3753; Metazoa - 6674; Fungi - 4562; Plants - 2007; Viruses - 0; Other Eukaryotes - 2293 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010224
IGI, IEP
IBA
Gene Ontologyresponse to UV-B1 2 3
GO:0010114
IEP
Gene Ontologyresponse to red light4
GO:0010218
IEP
Gene Ontologyresponse to far red light4
GO:0043254
IDA
Gene Ontologyregulation of protein-containing complex assembly5
GO:0009908
IEA
GOA Databaseflower development
GO:0009640
ISO
PLAZA Homology (enrichment)photomorphogenesis HOM05D000684

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding6
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex7
GO:0005829
IEA
GOA Databasecytosol
GO:0005737
IEA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036322 WD40-repeat-containing domain superfamily
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR044616 WD repeat-containing protein RUP1/2
Mapman id Description
26.1.3.3 External stimuli response.light.UV-B light.regulatory protein (RUP)