Gene: AT5G50480

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G50480
  • Transcript Identifier AT5G50480.1
  • Gene Type Coding gene
  • Location Chr5 : 20557856-20558464 : negative

Gene Family Information

  • ID HOM05D000789
  • #Genes/#Species 750/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G50480.1
  • symbol NF-YC6
  • full_name nuclear factor Y%2C subunit C6
  • uniprot Q9FGP7

Descriptions

  • Description nuclear factor Y, subunit C6
  • Computational description nuclear factor Y, subunit C6 (NF-YC6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C7 (TAIR:AT5G50470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
ISS, IBA
Gene Ontologyregulation of transcription, DNA-templated1 2
GO:0045944
IEA
GOA Databasepositive regulation of transcription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046982
IEA
Gene Ontologyprotein heterodimerization activity
GO:0046982
IEA
InterProprotein heterodimerization activity
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding3
GO:0001228
IBA
Gene OntologyDNA-binding transcription activator activity, RNA polymerase II-specific2
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Os08g0496500

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus2
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm Os08g0496500

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003958 Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 Histone-fold
Mapman id Description
15.5.49.3 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YC