Gene: AT5G49890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G49890
  • Transcript Identifier AT5G49890.1
  • Gene Type Coding gene
  • Location Chr5 : 20288489-20292143 : negative

Gene Family Information

  • ID HOM05D000572
  • #Genes/#Species 968/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G49890.1
  • symbol CLC-C
  • Alias ATCLC-C
  • uniprot Q96282

Descriptions

  • Description chloride channel C
  • Computational description chloride channel C (CLC-C); FUNCTIONS IN: anion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport, transmembrane transport; LOCATED IN: plant-type vacuole membrane, intracellular, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Chloride channel ClC-plant (InterPro:IPR002251), Cystathionine beta-synthase, core (InterPro:IPR000644), Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: Voltage-gated chloride channel family protein (TAIR:AT5G33280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0055085
IEA
GOA Databasetransmembrane transport
GO:0055085
IEA
InterProtransmembrane transport
GO:0006821
IEA
GOA Databasechloride transport
GO:0006821
IEA
InterProchloride transport
GO:0034765
IEA
GOA Databaseregulation of ion transmembrane transport
GO:0006811
IEA
GOA Databaseion transport
GO:0034220
IEA
GOA Databaseion transmembrane transport
GO:1902476
IEA
GOA Databasechloride transmembrane transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005247
IEA
Gene Ontologyvoltage-gated chloride channel activity
GO:0005247
IEA
InterProvoltage-gated chloride channel activity
GO:0005244
IEA
GOA Databasevoltage-gated ion channel activity
GO:0005254
IEA
GOA Databasechloride channel activity
GO:0015108
IBA
Gene Ontologychloride transmembrane transporter activity1
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0005253
ISS
Gene Ontologyanion channel activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005774
IDA
GOA Databasevacuolar membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0034707
IEA
GOA Databasechloride channel complex
GO:0043231
IBA
Gene Ontologyintracellular membrane-bounded organelle1
GO:0009705
IDA
IBA
Gene Ontologyplant-type vacuole membrane1 3
GO:0005622
TAS
Gene Ontologyintracellular anatomical structure4
GO:0009536
HDA
Gene Ontologyplastid5
GO:0000325
HDA
Gene Ontologyplant-type vacuole6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002251 Chloride channel ClC-plant
IPR001807 Chloride channel, voltage gated
IPR000644 CBS domain
IPR014743 Chloride channel, core
Mapman id Description
24.2.15 Solute transport.carrier-mediated transport.anion channel / anion:proton antiporter (CLC)