Gene: AT5G47930

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G47930
  • Transcript Identifier AT5G47930.1
  • Gene Type Coding gene
  • Location Chr5 : 19406423-19407329 : negative

Gene Family Information

  • ID HOM05D001393
  • #Genes/#Species 450/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G47930.1
  • uniprot Q8L953

Descriptions

  • Description Zinc-binding ribosomal protein family protein
  • Computational description Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: ribosomal protein S27 (TAIR:AT3G61110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0000028
IBA
Gene Ontologyribosomal small subunit assembly1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IDA
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003729
IDA
Gene OntologymRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome3
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0022627
IDA
GOA Databasecytosolic small ribosomal subunit
GO:0022627
HDA
IBA
Gene Ontologycytosolic small ribosomal subunit1 4
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0009536
HDA
Gene Ontologyplastid5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000592 Ribosomal protein S27
IPR011332 Zinc-binding ribosomal protein
IPR023407 Ribosomal protein S27, zinc-binding domain superfamily
Mapman id Description
17.1.3.1.28 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS27