Gene: AT5G46700
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G46700
- Transcript Identifier AT5G46700.1
- Gene Type Coding gene
- Location Chr5 : 18951035-18952439 : positive
Gene Family Information
- ID HOM05D000318
- #Genes/#Species 1452/97
- Phylogenetic origin
- ID ORTHO05D000420
- #Genes/#Species 954/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G46700.1
- symbol TRN2
- Alias TET1,TETRASPANIN 1
- full_name TORNADO 2
- uniprot Q9FIQ5
Descriptions
- Description Tetraspanin family protein
- Computational description TORNADO 2 (TRN2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: radial pattern formation, meristem structural organization, aging, leaf vascular tissue pattern formation, root morphogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin2 (TAIR:AT2G19580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009734 | IEA | GOA Database | auxin-activated signaling pathway | |
| GO:0009734 | IEA | InterPro | auxin-activated signaling pathway | |
| GO:0009554 | IMP | Gene Ontology | megasporogenesis | 1 |
| GO:0009934 | IMP | Gene Ontology | regulation of meristem structural organization | 2 |
| GO:0010305 | IMP | Gene Ontology | leaf vascular tissue pattern formation | 3 |
| GO:0010015 | IMP | Gene Ontology | root morphogenesis | 4 |
| GO:0009956 | IMP | Gene Ontology | radial pattern formation | 4 |
| GO:0009933 | IMP | Gene Ontology | meristem structural organization | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003674 | ND | Gene Ontology | molecular_function |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005886 | IDA | GOA Database | plasma membrane | |
| GO:0005886 | IBA | Gene Ontology | plasma membrane | 5 |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0016021 | IEA | InterPro | integral component of membrane | |
| GO:0009506 | IDA | GOA Database | plasmodesma | |
| GO:0009506 | HDA IBA | Gene Ontology | plasmodesma | 5 6 |
| GO:0016020 | IEA | GOA Database | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |