Gene: AT5G42080
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G42080
- Transcript Identifier AT5G42080.1
- Gene Type Coding gene
- Location Chr5 : 16820661-16824536 : negative
Gene Family Information
- ID HOM05D000331
- #Genes/#Species 1415/100
- Phylogenetic origin
- ID ORTHO05D000732
- #Genes/#Species 646/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G42080.1
- symbol DL1
- Alias ADL1A,ADL1,dynamin-like protein,AG68,DRP1A,DYNAMIN-RELATED PROTEIN 1A,RSW9,RADIAL SWELLING 9
- uniprot P42697
Descriptions
- Description dynamin-like protein
- Computational description dynamin-like protein (DL1); FUNCTIONS IN: protein binding, clathrin binding, GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1B (TAIR:AT3G61760.1); Has 2870 Blast hits to 2761 proteins in 321 species: Archae - 2; Bacteria - 66; Metazoa - 1056; Fungi - 810; Plants - 578; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006898 | IBA | Gene Ontology | receptor-mediated endocytosis | 1 |
GO:0080029 | IMP | Gene Ontology | cellular response to boron-containing substance levels | 2 |
GO:0010036 | IMP | Gene Ontology | response to boron-containing substance | 2 |
GO:0006886 | IMP | Gene Ontology | intracellular protein transport | 2 |
GO:0007049 | IEA | GOA Database | cell cycle | |
GO:0051301 | IEA | GOA Database | cell division | |
GO:0015031 | IEA | GOA Database | protein transport | |
GO:0080157 | IMP | Gene Ontology | regulation of plant-type cell wall organization or biogenesis | 3 |
GO:0030100 | IMP | Gene Ontology | regulation of endocytosis | 3 |
GO:0009920 | IDA, IMP, IGI | Gene Ontology | cell plate formation involved in plant-type cell wall biogenesis | 3 4 5 |
GO:0010051 | IMP | Gene Ontology | xylem and phloem pattern formation | 6 |
GO:2000694 | IMP | Gene Ontology | regulation of phragmoplast microtubule organization | 3 |
GO:0010091 | IMP | Gene Ontology | trichome branching | 4 |
GO:0009793 | IGI | Gene Ontology | embryo development ending in seed dormancy | 4 |
GO:0000911 | IGI | Gene Ontology | cytokinesis by cell plate formation | 4 |
GO:0048480 | IMP | Gene Ontology | stigma development | 7 |
GO:0072583 | IDA | Gene Ontology | clathrin-dependent endocytosis | 8 |
GO:1905952 | IDA | Gene Ontology | regulation of lipid localization | 5 |
GO:0048766 | IMP | Gene Ontology | root hair initiation | 9 |
GO:2000114 | IMP | Gene Ontology | regulation of establishment of cell polarity | 9 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0008017 | IBA | Gene Ontology | microtubule binding | 1 |
GO:0003924 | IDA IBA IEA | Gene Ontology | GTPase activity | 1 6 |
GO:0003924 | IEA | InterPro | GTPase activity | |
GO:0000166 | IEA | GOA Database | nucleotide binding | |
GO:0016787 | IEA | GOA Database | hydrolase activity | |
GO:0005525 | IEA | GOA Database | GTP binding | |
GO:0005525 | IEA | InterPro | GTP binding | |
GO:0005515 | IPI | Gene Ontology | protein binding | 6 |
GO:0043424 | IPI | Gene Ontology | protein histidine kinase binding | 10 |
GO:0030276 | IDA | Gene Ontology | clathrin binding | 8 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005737 | IEA | GOA Database | cytoplasm | |
GO:0005737 | IDA ISM, IBA | Gene Ontology | cytoplasm | 1 11 |
GO:0005886 | IEA | GOA Database | plasma membrane | |
GO:0005886 | IDA, HDA IBA | Gene Ontology | plasma membrane | 1 8 12 |
GO:0005938 | IEA | GOA Database | cell cortex | |
GO:0005938 | IDA | Gene Ontology | cell cortex | 7 |
GO:0005856 | IEA | GOA Database | cytoskeleton | |
GO:0005856 | IDA | Gene Ontology | cytoskeleton | 11 |
GO:0030136 | IEA | GOA Database | clathrin-coated vesicle | |
GO:0030136 | IDA | Gene Ontology | clathrin-coated vesicle | 7 |
GO:0005874 | IEA | GOA Database | microtubule | |
GO:0005874 | IDA IBA | Gene Ontology | microtubule | 1 6 |
GO:0016020 | IEA | GOA Database | membrane | |
GO:0016020 | IBA | Gene Ontology | membrane | 1 |
GO:0009524 | IEA | GOA Database | phragmoplast | |
GO:0009524 | IDA | Gene Ontology | phragmoplast | 3 |
GO:0009535 | IDA | Gene Ontology | chloroplast thylakoid membrane | 13 |
GO:0009536 | HDA | Gene Ontology | plastid | 14 |
GO:0005774 | IDA | GOA Database | vacuolar membrane | |
GO:0005773 | IDA | GOA Database | vacuole | |
GO:0005829 | IDA | GOA Database | cytosol | |
GO:0009506 | IDA | GOA Database | plasmodesma | |
GO:0009506 | HDA | Gene Ontology | plasmodesma | 15 |
GO:0031410 | IEA | GOA Database | cytoplasmic vesicle | |
GO:0000325 | HDA | Gene Ontology | plant-type vacuole | 16 |
GO:0009504 | IDA | Gene Ontology | cell plate | 4 |
GO:0045334 | IDA | Gene Ontology | clathrin-coated endocytic vesicle | 8 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
13.4.2.6 | Cell cycle organisation.cytokinesis.cell-plate formation.phragmoplastin (DRP1) |