Gene: AT5G41920
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G41920
- Transcript Identifier AT5G41920.1
- Gene Type Coding gene
- Location Chr5 : 16779982-16781199 : positive
Gene Family Information
- ID HOM05D000063
- #Genes/#Species 3996/96
- Phylogenetic origin
- ID ORTHO05D002147
- #Genes/#Species 312/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G41920.1
- Alias AtSCL23,SCL23,SCARECROW-LIKE 23
- uniprot Q9FHZ1
Descriptions
- Description GRAS family transcription factor
- Computational description GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT3G54220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IBA TAS | Gene Ontology | regulation of transcription, DNA-templated | 1 2 |
| GO:0048366 | IMP IBA | Gene Ontology | leaf development | 2 3 |
| GO:0090610 | IMP IBA | Gene Ontology | bundle sheath cell fate specification | 2 3 |
| GO:0001714 | IGI | Gene Ontology | endodermal cell fate specification | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | ISS, IBA | Gene Ontology | DNA-binding transcription factor activity | 1 2 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 5 |
| GO:0000976 | IPI | Gene Ontology | transcription cis-regulatory region binding | 6 |
| GO:0043565 | IBA | Gene Ontology | sequence-specific DNA binding | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM, IBA | Gene Ontology | nucleus | 2 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005202 | Transcription factor GRAS |
| Mapman id | Description |
|---|---|
| 15.5.12 | RNA biosynthesis.transcriptional regulation.transcription factor (GRAS) |