Gene: AT5G41520

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G41520
  • Transcript Identifier AT5G41520.1
  • Gene Type Coding gene
  • Location Chr5 : 16609377-16610583 : negative

Gene Family Information

  • ID HOM05D001943
  • #Genes/#Species 340/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G41520.1
  • symbol RPS10B
  • full_name ribosomal protein S10e B
  • uniprot Q9FFS8

Descriptions

  • Description RNA binding Plectin/S10 domain-containing protein
  • Computational description RNA binding Plectin/S10 domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT4G25740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:2000032
IGI
Gene Ontologyregulation of secondary shoot formation1
GO:0090506
IGI
Gene Ontologyaxillary shoot meristem initiation1
GO:0010252
IGI
Gene Ontologyauxin homeostasis1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
Gene OntologymRNA binding2 3
GO:0003735
IDA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome4
GO:0003723
IBA
Gene OntologyRNA binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
GOA Databaseribosome
GO:0005829
IDA
GOA Databasecytosol
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast5
GO:0005618
IDA
GOA Databasecell wall
GO:0022627
IDA
GOA Databasecytosolic small ribosomal subunit
GO:0022627
HDA
IBA
Gene Ontologycytosolic small ribosomal subunit4 6
GO:0005737
IEA
GOA Databasecytoplasm
GO:0042788
IDA
GOA Databasepolysomal ribosome
GO:0022626
IDA, HDA
Gene Ontologycytosolic ribosome7 8
GO:0005654
IDA
Gene Ontologynucleoplasm8
GO:0009536
HDA
Gene Ontologyplastid9
GO:0009505
HDA
Gene Ontologyplant-type cell wall10

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037447 40S Ribosomal protein S10
IPR005326 Plectin/S10, N-terminal
IPR036388 Winged helix-like DNA-binding domain superfamily
Mapman id Description
17.1.3.1.11 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS10