Gene: AT5G40140

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G40140
  • Transcript Identifier AT5G40140.1
  • Gene Type Coding gene
  • Location Chr5 : 16057347-16058999 : positive

Gene Family Information

  • ID HOM05D002131
  • #Genes/#Species 314/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G40140.1
  • uniprot Q9FL17

Descriptions

  • Description RING/U-box superfamily protein with ARM repeat domain-containing protein
  • Computational description RING/U-box superfamily protein with ARM repeat domain; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 38 (TAIR:AT5G65200.1); Has 3757 Blast hits to 2892 proteins in 207 species: Archae - 0; Bacteria - 10; Metazoa - 408; Fungi - 448; Plants - 2529; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
Gene Ontologyprotein ubiquitination
GO:0016567
IEA
InterProprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0005515
IEA
InterProprotein binding
GO:0061630
IDA
Gene Ontologyubiquitin protein ligase activity1
GO:0016740
IEA
GOA Databasetransferase activity
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM, IBA
Gene Ontologycytoplasm2
GO:0005634
IBA
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000225 Armadillo
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR003613 U box domain
IPR011989 Armadillo-like helical
IPR016024 Armadillo-type fold
Mapman id Description
19.2.2.1.4.2.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.U-Box E3 ligase activities.group-II ligase