Gene: AT5G39850

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G39850
  • Transcript Identifier AT5G39850.1
  • Gene Type Coding gene
  • Location Chr5 : 15950053-15951171 : positive

Gene Family Information

  • ID HOM05D001645
  • #Genes/#Species 393/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G39850.1
  • uniprot Q9FLF0

Descriptions

  • Description Ribosomal protein S4
  • Computational description Ribosomal protein S4; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), Ribosomal protein S4, conserved site (InterPro:IPR018079), Ribosomal protein S4/S9, eukaryotic/archaeal (InterPro:IPR005710), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (TAIR:AT5G15200.1); Has 6814 Blast hits to 6810 proteins in 3349 species: Archae - 264; Bacteria - 730; Metazoa - 422; Fungi - 285; Plants - 4172; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0045903
IBA
Gene Ontologypositive regulation of translational fidelity1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0019843
IEA
GOA DatabaserRNA binding
GO:0019843
IBA
Gene OntologyrRNA binding1
GO:0019843
IEA
InterProrRNA binding
GO:0003729
IDA
Gene OntologymRNA binding2
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0015935
IEA
GOA Databasesmall ribosomal subunit
GO:0015935
IBA
Gene Ontologysmall ribosomal subunit1
GO:0015935
IEA
InterProsmall ribosomal subunit
GO:0005840
IEA
GOA Databaseribosome
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma4
GO:0022627
IBA
Gene Ontologycytosolic small ribosomal subunit1
GO:0009536
HDA
Gene Ontologyplastid5
GO:0005794
RCA
Gene OntologyGolgi apparatus6
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001912 Ribosomal protein S4/S9, N-terminal
IPR002942 RNA-binding S4 domain
IPR005710 Ribosomal protein S4/S9, eukaryotic/archaeal
IPR022801 Ribosomal protein S4/S9
IPR036986 RNA-binding S4 domain superfamily
Mapman id Description
17.1.3.1.10 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS9