Gene: AT5G39760

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G39760
  • Transcript Identifier AT5G39760.1
  • Gene Type Coding gene
  • Location Chr5 : 15911543-15912547 : positive

Gene Family Information

  • ID HOM05D000243
  • #Genes/#Species 1731/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G39760.1
  • symbol HB23
  • Alias AtHB23,homeobox protein 23,ZHD10,ZINC FINGER HOMEODOMAIN 10
  • uniprot Q9FIW9

Descriptions

  • Description homeobox protein 23
  • Computational description homeobox protein 23 (HB23); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 34 (TAIR:AT3G28920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009740
IEA
GOA Databasegibberellic acid mediated signaling pathway
GO:0006355
IBA
Gene Ontologyregulation of transcription, DNA-templated1
GO:0045893
IEP
Gene Ontologypositive regulation of transcription, DNA-templated2
GO:0009637
IDA
Gene Ontologyresponse to blue light2
GO:0001173
IEP
Gene OntologyDNA-templated transcriptional start site selection2
GO:0009739
IEP
Gene Ontologyresponse to gibberellin3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008134
IPI
Gene Ontologytranscription factor binding2
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
ISS
Gene OntologyDNA binding4
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0000976
IPI
IBA
Gene Ontologytranscription cis-regulatory region binding1 5
GO:0003700
IBA
Gene OntologyDNA-binding transcription factor activity1
GO:0042803
IDA
ISS
Gene Ontologyprotein homodimerization activity6
GO:0005515
IPI
Gene Ontologyprotein binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISS, ISM, IBA
Gene Ontologynucleus1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006456 ZF-HD homeobox protein, Cys/His-rich dimerisation domain
IPR009057 Homeobox-like domain superfamily
IPR006455 Homeodomain, ZF-HD class
Mapman id Description
15.5.3.12 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (zf-HD)