Gene: AT5G39160

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G39160
  • Transcript Identifier AT5G39160.1
  • Gene Type Coding gene
  • Location Chr5 : 15679195-15679970 : negative

Gene Family Information

  • ID HOM05D000052
  • #Genes/#Species 4418/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G39160.1
  • uniprot P92999

Descriptions

  • Description RmlC-like cupins superfamily protein
  • Computational description RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 2 (TAIR:AT5G39190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030145
IEA
Gene Ontologymanganese ion binding
GO:0030145
IEA
InterPromanganese ion binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0050162
ISO
PLAZA Integrative Orthologyoxalate oxidase activity AT5G39190

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
IEA
GOA Databaseextracellular region
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0005618
IBA
Gene Ontologycell wall1
GO:0048046
IEA
GOA Databaseapoplast
GO:0031012
ISO
PLAZA Integrative Orthologyextracellular matrix AT5G39190

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006045 Cupin 1
IPR011051 RmlC-like cupin domain superfamily
IPR001929 Germin
IPR014710 RmlC-like jelly roll fold
Mapman id Description
35.1 not assigned.annotated