Gene: AT5G38420

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G38420
  • Transcript Identifier AT5G38420.1
  • Gene Type Coding gene
  • Location Chr5 : 15381203-15381978 : negative

Gene Family Information

  • ID HOM05D001330
  • #Genes/#Species 472/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G38420.1
  • symbol RBCS2B
  • full_name Rubisco small subunit 2B
  • uniprot P10797

Descriptions

  • Description Ribulose bisphosphate carboxylase (small chain) family protein
  • Computational description Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 8 components; EXPRESSED IN: 10 plant structures; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0110102
ISO
PLAZA Integrative Orthologyribulose bisphosphate carboxylase complex assembly AT5G38410
GO:0019253
IEA
GOA Databasereductive pentose-phosphate cycle
GO:0015979
IEA
GOA Databasephotosynthesis
GO:0015977
IEA
GOA Databasecarbon fixation
GO:0009853
IEA
GOA Databasephotorespiration

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G38410
GO:0019904
IPI
GOA Databaseprotein domain specific binding
GO:0003729
IDA
Gene OntologymRNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope2
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
HDA
Gene Ontologyplastid3
GO:0009579
IDA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid4
GO:0048046
IDA
GOA Databaseapoplast
GO:0048046
HDA
Gene Ontologyapoplast5
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome6
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast7
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036385 Ribulose bisphosphate carboxylase, small subunit superfamily
IPR024680 Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal
IPR000894 Ribulose bisphosphate carboxylase small subunit, domain
IPR024681 Ribulose bisphosphate carboxylase, small subunit
Mapman id Description
1.2.1.1.2 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo heterodimer.small subunit