Gene: AT5G38070

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G38070
  • Transcript Identifier AT5G38070.1
  • Gene Type Coding gene
  • Location Chr5 : 15190254-15191588 : positive

Gene Family Information

  • ID HOM05D000618
  • #Genes/#Species 925/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G38070.1
  • uniprot Q9LS14

Descriptions

  • Description RING/FYVE/PHD zinc finger superfamily protein
  • Computational description RING/FYVE/PHD zinc finger superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G01275.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IDA
IBA
Gene Ontologyprotein ubiquitination1 2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0004842
IDA
IBA
Gene Ontologyubiquitin-protein transferase activity1 2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IBA
Gene Ontologymembrane2
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022143 Protein of unknown function DUF3675
IPR011016 Zinc finger, RING-CH-type
IPR033275 E3 ubiquitin-protein ligase MARCH-like
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
19.2.2.1.4.3.4 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-v-class E3 ligase