Gene: AT5G37800

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G37800
  • Transcript Identifier AT5G37800.1
  • Gene Type Coding gene
  • Location Chr5 : 15036197-15037574 : positive

Gene Family Information

  • ID HOM05D001118
  • #Genes/#Species 550/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G37800.1
  • symbol RSL1
  • Alias ATRSL1,ARABIDOPSIS THALIANA RHD SIX-LIKE 1
  • uniprot Q9FJ00

Descriptions

  • Description RHD SIX-LIKE 1
  • Computational description RHD SIX-LIKE 1 (RSL1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ROOT HAIR DEFECTIVE6 (TAIR:AT1G66470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000209
IBA
Gene Ontologyprotein polyubiquitination1
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II1
GO:0032436
IBA
Gene Ontologypositive regulation of proteasomal ubiquitin-dependent protein catabolic process1
GO:0006511
IBA
Gene Ontologyubiquitin-dependent protein catabolic process1
GO:0006355
ISS
TAS
Gene Ontologyregulation of transcription, DNA-templated2 3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding1
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific1
GO:0031624
IBA
Gene Ontologyubiquitin conjugating enzyme binding1
GO:0061630
IBA
Gene Ontologyubiquitin protein ligase activity1
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0000151
IBA
Gene Ontologyubiquitin ligase complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)