Gene: AT5G35840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G35840
  • Transcript Identifier AT5G35840.1
  • Gene Type Coding gene
  • Location Chr5 : 14008049-14011619 : positive

Gene Family Information

  • ID HOM05D001060
  • #Genes/#Species 575/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G35840.1
  • symbol PHYC
  • uniprot Q15EE1

Descriptions

  • Description phytochrome C
  • Computational description phytochrome C (PHYC); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome A (TAIR:AT1G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0018298
IEA
GOA Databaseprotein-chromophore linkage
GO:0018298
IEA
InterProprotein-chromophore linkage
GO:0007165
ISO
PLAZA Homology (enrichment)signal transduction HOM05D001060
GO:0017006
IEA
Gene Ontologyprotein-tetrapyrrole linkage
GO:0017006
IEA
InterProprotein-tetrapyrrole linkage
GO:0009585
IEA
Gene Ontologyred, far-red light phototransduction
GO:0009585
IEA
InterProred, far-red light phototransduction
GO:0009584
IEA
Gene Ontologydetection of visible light
GO:0009584
IEA
InterProdetection of visible light
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0050896
IEA
GOA Databaseresponse to stimulus

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000155
ISO
PLAZA Homology (enrichment)phosphorelay sensor kinase activity HOM05D001060
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0005515
IEA
InterProprotein binding
GO:0042803
IEA
Gene Ontologyprotein homodimerization activity
GO:0042803
IEA
InterProprotein homodimerization activity
GO:0009881
IEA
GOA Databasephotoreceptor activity
GO:0009881
IEA
InterProphotoreceptor activity
GO:0004673
ISS
Gene Ontologyprotein histidine kinase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
Gene Ontologynucleus2
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013654 PAS fold-2
IPR001294 Phytochrome
IPR036890 Histidine kinase/HSP90-like ATPase superfamily
IPR000014 PAS domain
IPR001610 PAC motif
IPR012129 Phytochrome A/B/C/D/E
IPR043150 Phytochrome, PHY domain
IPR003018 GAF domain
IPR003594 Histidine kinase/HSP90-like ATPase
IPR013515 Phytochrome, central region
IPR035965 PAS domain superfamily
IPR013767 PAS fold
IPR029016 GAF-like domain superfamily
IPR044767 Phytochrome A/B/C/D/E-like, histidine-kinase-related domain
Mapman id Description
26.1.1.1 External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)