Gene: AT5G35550

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G35550
  • Transcript Identifier AT5G35550.2
  • Gene Type Coding gene
  • Location Chr5 : 13726871-13727729 : positive

Gene Family Information

  • ID HOM05D000008
  • #Genes/#Species 9932/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G35550.2
  • symbol TT2
  • Alias ATMYB123,MYB DOMAIN PROTEIN 123,ATTT2,MYB123,MYB DOMAIN PROTEIN 123
  • full_name TRANSPARENT TESTA 2
  • uniprot Q9FJA2

Descriptions

  • Description Duplicated homeodomain-like superfamily protein
  • Computational description TRANSPARENT TESTA 2 (TT2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 5 (TAIR:AT3G13540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010023
IMP
Gene Ontologyproanthocyanidin biosynthetic process1
GO:0006633
IMP
Gene Ontologyfatty acid biosynthetic process2
GO:0006970
IMP
Gene Ontologyresponse to osmotic stress2
GO:0030154
IBA
Gene Ontologycell differentiation3
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0009813
IEA
GOA Databaseflavonoid biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity4
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0000976
IBA
Gene Ontologytranscription cis-regulatory region binding3
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005524
IEA
GOA DatabaseATP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009057 Homeobox-like domain superfamily
IPR001005 SANT/Myb domain
IPR017930 Myb domain
Mapman id Description
15.5.2.1 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)