Gene: AT5G33290
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G33290
- Transcript Identifier AT5G33290.1
- Gene Type Coding gene
- Location Chr5 : 12558439-12561840 : positive
Gene Family Information
- ID HOM05D000191
- #Genes/#Species 2034/99
- Phylogenetic origin
- ID ORTHO05D000122
- #Genes/#Species 1852/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G33290.1
- symbol XGD1
- uniprot Q94AA9
Descriptions
- Description xylogalacturonan deficient 1
- Computational description xylogalacturonan deficient 1 (XGD1); CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT3G42180.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006486 | IEA | Gene Ontology | protein glycosylation | |
| GO:0006486 | IEA | InterPro | protein glycosylation | |
| GO:0071555 | IEA | GOA Database | cell wall organization | |
| GO:0045489 | IMP | Gene Ontology | pectin biosynthetic process | 1 |
| GO:0010398 | IMP | Gene Ontology | xylogalacturonan metabolic process | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016757 | IEA | GOA Database | glycosyltransferase activity | |
| GO:0016757 | IEA | InterPro | glycosyltransferase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0035252 | IDA | Gene Ontology | UDP-xylosyltransferase activity | 1 |
| GO:0102983 | IEA | Gene Ontology | xylogalacturonan beta-1,3-xylosyltransferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000139 | IEA | GOA Database | Golgi membrane | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0005794 | IEA | GOA Database | Golgi apparatus | |
| GO:0005794 | IDA, HDA | Gene Ontology | Golgi apparatus | 1 2 |
| GO:0005802 | IDA | GOA Database | trans-Golgi network | |
| GO:0005802 | HDA | Gene Ontology | trans-Golgi network | 2 |
| GO:0005768 | IDA | GOA Database | endosome | |
| GO:0005768 | HDA | Gene Ontology | endosome | 2 |
| GO:0009507 | ISM | Gene Ontology | chloroplast |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 21.3.4.1.1 | Cell wall organisation.pectin.xylogalacturonan.biosynthesis.xylogalacturonan xylosyltransferase |