Gene: AT5G28060
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G28060
- Transcript Identifier AT5G28060.1
- Gene Type Coding gene
- Location Chr5 : 10069791-10070792 : negative
Gene Family Information
- ID HOM05D001893
- #Genes/#Species 348/98
- Phylogenetic origin
- ID ORTHO05D001914
- #Genes/#Species 338/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G28060.1
- uniprot Q8LC83
Descriptions
- Description Ribosomal protein S24e family protein
- Computational description Ribosomal protein S24e family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S24e (InterPro:IPR001976), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal S24e conserved site (InterPro:IPR018098); BEST Arabidopsis thaliana protein match is: Ribosomal protein S24e family protein (TAIR:AT3G04920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IEA | Gene Ontology | translation | |
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003735 | IDA IEA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003729 | IDA | Gene Ontology | mRNA binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0022626 | IDA | GOA Database | cytosolic ribosome | |
| GO:0022626 | HDA | Gene Ontology | cytosolic ribosome | 2 |
| GO:0005618 | IDA | GOA Database | cell wall | |
| GO:0022627 | IDA | GOA Database | cytosolic small ribosomal subunit | |
| GO:0022627 | HDA | Gene Ontology | cytosolic small ribosomal subunit | 3 |
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0042788 | IDA | GOA Database | polysomal ribosome | |
| GO:0009536 | HDA | Gene Ontology | plastid | 4 |
| GO:0005794 | RCA | Gene Ontology | Golgi apparatus | 5 |
| GO:0009505 | HDA | Gene Ontology | plant-type cell wall | 6 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 17.1.3.1.25 | Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS24 |