Gene: AT5G23860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G23860
  • Transcript Identifier AT5G23860.1
  • Gene Type Coding gene
  • Location Chr5 : 8042962-8044528 : positive

Gene Family Information

  • ID HOM05D000282
  • #Genes/#Species 1541/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G23860.1
  • symbol TUB8
  • uniprot P29516

Descriptions

  • Description tubulin beta 8
  • Computational description tubulin beta 8 (TUB8); FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to cyclopentenone, response to salt stress, response to cold; LOCATED IN: tubulin complex, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007017
IEA
GOA Databasemicrotubule-based process
GO:0007017
ISS
Gene Ontologymicrotubule-based process1
GO:0007017
IEA
InterPromicrotubule-based process
GO:0000278
IBA
Gene Ontologymitotic cell cycle2
GO:0000226
IBA
Gene Ontologymicrotubule cytoskeleton organization2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005200
IEA
GOA Databasestructural constituent of cytoskeleton
GO:0005200
ISS, IBA
Gene Ontologystructural constituent of cytoskeleton1 2
GO:0005200
IEA
InterProstructural constituent of cytoskeleton
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IBA
Gene OntologyGTP binding2
GO:0005525
IEA
InterProGTP binding
GO:0003924
IEA
Gene OntologyGTPase activity
GO:0003924
IEA
InterProGTPase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003729
IDA
Gene OntologymRNA binding3
GO:0005515
IPI
Gene Ontologyprotein binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005874
IEA
GOA Databasemicrotubule
GO:0005874
IBA
Gene Ontologymicrotubule2
GO:0005874
IEA
InterPromicrotubule
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM, IBA
Gene Ontologycytoplasm2
GO:0005794
IDA
GOA DatabaseGolgi apparatus
GO:0005794
HDA
Gene OntologyGolgi apparatus5
GO:0005856
IEA
GOA Databasecytoskeleton
GO:0005829
HDA
Gene Ontologycytosol6
GO:0045298
ISS
Gene Ontologytubulin complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003008 Tubulin/FtsZ, GTPase domain
IPR036525 Tubulin/FtsZ, GTPase domain superfamily
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 Tubulin, C-terminal
IPR000217 Tubulin
IPR008280 Tubulin/FtsZ, C-terminal
IPR037103 Tubulin/FtsZ-like, C-terminal domain
IPR002453 Beta tubulin
Mapman id Description
20.1.1.2 Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin