Gene: AT5G20630

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G20630
  • Transcript Identifier AT5G20630.1
  • Gene Type Coding gene
  • Location Chr5 : 6975315-6975950 : negative

Gene Family Information

  • ID HOM05D000052
  • #Genes/#Species 4418/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G20630.1
  • symbol GER3
  • Alias ATGER3,ARABIDOPSIS THALIANA GERMIN 3,GLP3A,GLP3B,GLP3,GERMIN-LIKE PROTEIN 3
  • uniprot P94072

Descriptions

  • Description germin 3
  • Computational description germin 3 (GER3); INVOLVED IN: response to cold, peptidyl-cysteine S-nitrosylation; LOCATED IN: extracellular matrix, apoplast, cell wall, nucleus, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 1 (TAIR:AT1G72610.1); Has 1486 Blast hits to 1484 proteins in 101 species: Archae - 0; Bacteria - 34; Metazoa - 0; Fungi - 23; Plants - 1414; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
IEP
GOA Databaseresponse to cold

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030145
IEA
Gene Ontologymanganese ion binding
GO:0030145
IEA
InterPromanganese ion binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0050162
IDA
Gene Ontologyoxalate oxidase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005618
IDA
GOA Databasecell wall
GO:0005618
HDA
IBA
Gene Ontologycell wall2 3
GO:0005576
IEA
GOA Databaseextracellular region
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0005634
IDA
GOA Databasenucleus
GO:0005634
HDA
Gene Ontologynucleus4
GO:0048046
IDA
IEA
GOA Databaseapoplast
GO:0048046
HDA
Gene Ontologyapoplast5
GO:0009536
HDA
Gene Ontologyplastid6
GO:0099503
HDA
Gene Ontologysecretory vesicle7
GO:0031012
IDA
Gene Ontologyextracellular matrix1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001929 Germin
IPR006045 Cupin 1
IPR014710 RmlC-like jelly roll fold
IPR011051 RmlC-like cupin domain superfamily
Mapman id Description
35.1 not assigned.annotated