Gene: AT5G18380

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G18380
  • Transcript Identifier AT5G18380.1
  • Gene Type Coding gene
  • Location Chr5 : 6090253-6090693 : negative

Gene Family Information

  • ID HOM05D001989
  • #Genes/#Species 333/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G18380.1
  • uniprot Q42340

Descriptions

  • Description Ribosomal protein S5 domain 2-like superfamily protein
  • Computational description Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, chloroplast; EXPRESSED IN: fruit, guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S9, conserved site (InterPro:IPR020574), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT2G09990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0000462
IBA
Gene Ontologymaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IDA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
IEA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003729
IDA, HDA
Gene OntologymRNA binding2 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015935
IBA
Gene Ontologysmall ribosomal subunit1
GO:0042788
ISO
PLAZA Integrative Orthologypolysomal ribosome AT2G09990
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G09990
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT2G09990
GO:0022626
ISO
PLAZA Integrative Orthologycytosolic ribosome AT2G09990
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma4
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast5
GO:0022627
IDA
GOA Databasecytosolic small ribosomal subunit
GO:0022627
HDA
IBA
Gene Ontologycytosolic small ribosomal subunit1 6
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0009536
HDA
Gene Ontologyplastid7
GO:0005794
RCA
Gene OntologyGolgi apparatus8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
IPR000754 Ribosomal protein S9
IPR020568 Ribosomal protein S5 domain 2-type fold
Mapman id Description
17.1.3.1.18 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS16