Gene: AT5G15200

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G15200
  • Transcript Identifier AT5G15200.1
  • Gene Type Coding gene
  • Location Chr5 : 4935124-4936334 : negative

Gene Family Information

  • ID HOM05D001645
  • #Genes/#Species 393/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G15200.1
  • uniprot Q9LXG1

Descriptions

  • Description Ribosomal protein S4
  • Computational description Ribosomal protein S4; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), Ribosomal protein S4, conserved site (InterPro:IPR018079), Ribosomal protein S4/S9, eukaryotic/archaeal (InterPro:IPR005710), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (TAIR:AT5G39850.1); Has 5786 Blast hits to 5783 proteins in 2880 species: Archae - 264; Bacteria - 571; Metazoa - 422; Fungi - 281; Plants - 3526; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0045903
IBA
Gene Ontologypositive regulation of translational fidelity1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IDA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
IEA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0019843
IEA
GOA DatabaserRNA binding
GO:0019843
IBA
Gene OntologyrRNA binding1
GO:0019843
IEA
InterProrRNA binding
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0003729
IDA, HDA
Gene OntologymRNA binding3 4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0022627
IDA
GOA Databasecytosolic small ribosomal subunit
GO:0022627
HDA
IBA
Gene Ontologycytosolic small ribosomal subunit1 5
GO:0042788
IDA
GOA Databasepolysomal ribosome
GO:0005618
IDA
GOA Databasecell wall
GO:0005774
IDA
GOA Databasevacuolar membrane
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus6
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast7
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome8
GO:0015935
IBA
IEA
Gene Ontologysmall ribosomal subunit1
GO:0015935
IEA
InterProsmall ribosomal subunit
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma9
GO:0005840
IEA
GOA Databaseribosome
GO:0005739
ISM
Gene Ontologymitochondrion
GO:0009505
HDA
Gene Ontologyplant-type cell wall10
GO:0000325
HDA
Gene Ontologyplant-type vacuole11
GO:0005794
RCA
Gene OntologyGolgi apparatus12
GO:0009536
HDA
Gene Ontologyplastid13

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022801 Ribosomal protein S4/S9
IPR036986 RNA-binding S4 domain superfamily
IPR002942 RNA-binding S4 domain
IPR001912 Ribosomal protein S4/S9, N-terminal
IPR005710 Ribosomal protein S4/S9, eukaryotic/archaeal
Mapman id Description
17.1.3.1.10 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS9