Gene: AT5G13120

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G13120
  • Transcript Identifier AT5G13120.1
  • Gene Type Coding gene
  • Location Chr5 : 4162714-4164720 : negative

Gene Family Information

  • ID HOM05D000144
  • #Genes/#Species 2569/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G13120.1
  • symbol Pnsl5
  • Alias ATCYP20-2,ARABIDOPSIS THALIANA CYCLOPHILIN 20-2,CYP20-2,cyclophilin 20-2
  • full_name Photosynthetic NDH subcomplex L 5
  • uniprot Q9ASS6

Descriptions

  • Description cyclophilin 20-2
  • Computational description cyclophilin 20-2 (CYP20-2); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, NAD(P)H dehydrogenase complex assembly; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 4 (TAIR:AT3G62030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006457
IEA
GOA Databaseprotein folding
GO:0006457
IBA
Gene Ontologyprotein folding1
GO:0000413
IEA
GOA Databaseprotein peptidyl-prolyl isomerization
GO:0000413
IBA
Gene Ontologyprotein peptidyl-prolyl isomerization1
GO:0000413
IEA
InterProprotein peptidyl-prolyl isomerization
GO:0010275
IMP
Gene OntologyNAD(P)H dehydrogenase complex assembly2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0003755
IEA
GOA Databasepeptidyl-prolyl cis-trans isomerase activity
GO:0003755
IMP
IBA
Gene Ontologypeptidyl-prolyl cis-trans isomerase activity1 3
GO:0003755
IEA
InterPropeptidyl-prolyl cis-trans isomerase activity
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0043424
IPI
Gene Ontologyprotein histidine kinase binding4
GO:0016018
IBA
Gene Ontologycyclosporin A binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009535
IDA
IEA
GOA Databasechloroplast thylakoid membrane
GO:0009535
HDA
Gene Ontologychloroplast thylakoid membrane5
GO:0031977
IDA
GOA Databasethylakoid lumen
GO:0031977
HDA
Gene Ontologythylakoid lumen6
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast7
GO:0009579
IDA
IEA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid8
GO:0009534
IDA
GOA Databasechloroplast thylakoid
GO:0009534
HDA
Gene Ontologychloroplast thylakoid9
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
HDA
Gene Ontologyplastid10
GO:0016020
IEA
GOA Databasemembrane
GO:0009533
IDA
Gene Ontologychloroplast stromal thylakoid2
GO:0009543
HDA
Gene Ontologychloroplast thylakoid lumen6
GO:0005737
IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain
IPR029000 Cyclophilin-like domain superfamily
Mapman id Description
1.1.8.1.4.5 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.component PnsL5
18.13.1 Protein modification.protein folding.protein folding catalyst (Cyclophilin)