Gene: AT5G12850

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G12850
  • Transcript Identifier AT5G12850.1
  • Gene Type Coding gene
  • Location Chr5 : 4057068-4059188 : positive

Gene Family Information

  • ID HOM05D000377
  • #Genes/#Species 1292/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G12850.1
  • uniprot Q9LXV4

Descriptions

  • Description CCCH-type zinc finger protein with ARM repeat domain-containing protein
  • Computational description CCCH-type zinc finger protein with ARM repeat domain; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: CCCH-type zinc finger protein with ARM repeat domain (TAIR:AT2G41900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005737
IDA
GOA Databasecytoplasm
GO:0005737
HDA
Gene Ontologycytoplasm2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020683 Ankyrin repeat-containing domain
IPR000571 Zinc finger, CCCH-type
IPR002110 Ankyrin repeat
IPR036770 Ankyrin repeat-containing domain superfamily
Mapman id Description
16.8.2 RNA processing.mRNA sequestration.mRNA-binding regulatory factor (TZF)