Gene: AT5G09630

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G09630
  • Transcript Identifier AT5G09630.1
  • Gene Type Coding gene
  • Location Chr5 : 2986016-2987176 : negative

Gene Family Information

  • ID HOM05D002845
  • #Genes/#Species 243/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G09630.1
  • uniprot Q9LXC7

Descriptions

  • Description LisH/CRA/RING-U-box domains-containing protein
  • Computational description LisH/CRA/RING-U-box domains-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT2G22690.2); Has 826 Blast hits to 826 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 219; Plants - 140; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043161
IEA
GOA Databaseproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043161
IBA
Gene Ontologyproteasome-mediated ubiquitin-dependent protein catabolic process1
GO:0043161
IEA
InterProproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567
IEA
GOA Databaseprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
IEA
Gene Ontologyubiquitin protein ligase activity
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IBA
Gene Ontologyubiquitin-protein transferase activity1
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0034657
IBA
Gene OntologyGID complex1
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR045098 Fyv10 family
IPR013144 CRA domain
IPR037683 Rmd5, degenerated RING (dRING) finger
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR006595 CTLH, C-terminal LisH motif
IPR024964 CTLH/CRA C-terminal to LisH motif domain
Mapman id Description
19.2.1.3.1.2 Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Pro/N-degron pathway.GID ubiquitination complex.ubiquitin ligase component GID2