Gene: AT5G09280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G09280
  • Transcript Identifier AT5G09280.1
  • Gene Type Coding gene
  • Location Chr5 : 2880423-2881597 : negative

Gene Family Information

  • ID HOM05D000131
  • #Genes/#Species 2694/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G09280.1
  • uniprot Q9FY87

Descriptions

  • Description Pectin lyase-like superfamily protein
  • Computational description Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G30350.1); Has 1558 Blast hits to 1550 proteins in 258 species: Archae - 0; Bacteria - 650; Metazoa - 0; Fungi - 219; Plants - 684; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045490
IEA
Gene Ontologypectin catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016829
IEA
GOA Databaselyase activity
GO:0016829
ISS
Gene Ontologylyase activity
GO:0030570
IEA
Gene Ontologypectate lyase activity
GO:0030570
IEA
InterPropectate lyase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
ISM
Gene Ontologyextracellular region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012334 Pectin lyase fold
IPR002022 Pectate lyase
IPR045032 Pectin lyase family
IPR018082 AmbAllergen
IPR011050 Pectin lyase fold/virulence factor
Mapman id Description
21.3.5.2 Cell wall organisation.pectin.modification and degradation.pectate lyase