Gene: AT5G04220

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G04220
  • Transcript Identifier AT5G04220.1
  • Gene Type Coding gene
  • Location Chr5 : 1155985-1157366 : negative

Gene Family Information

  • ID HOM05D000524
  • #Genes/#Species 1038/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G04220.1
  • symbol SYTC
  • uniprot Q7XA06

Descriptions

  • Description Calcium-dependent lipid-binding (CaLB domain) family protein
  • Computational description SYTC; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006869
IEA
GOA Databaselipid transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0008289
IEA
GOA Databaselipid binding
GO:0008289
IEA
InterProlipid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
ISM
Gene Ontologyplasma membrane
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005783
IBA
Gene Ontologyendoplasmic reticulum1
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000008 C2 domain
IPR045050 Synaptotagmin, plant
IPR035892 C2 domain superfamily
Mapman id Description
35.1 not assigned.annotated