Gene: AT5G03850

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G03850
  • Transcript Identifier AT5G03850.1
  • Gene Type Coding gene
  • Location Chr5 : 1028542-1028736 : negative

Gene Family Information

  • ID HOM05D002408
  • #Genes/#Species 281/89
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G03850.1
  • uniprot B0LQ86

Descriptions

  • Description Nucleic acid-binding, OB-fold-like protein
  • Computational description Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome, cell wall, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT3G10090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA
Gene OntologymRNA binding1
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IEA
InterProstructural constituent of ribosome

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005886
HDA
Gene Ontologyplasma membrane2
GO:0009505
HDA
Gene Ontologyplant-type cell wall3
GO:0022627
HDA
Gene Ontologycytosolic small ribosomal subunit4
GO:0005829
RCA
Gene Ontologycytosol5
GO:0005794
RCA
Gene OntologyGolgi apparatus6
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0022626
ISO
PLAZA Integrative Orthologycytosolic ribosome AT5G64140
GO:0042788
ISO
PLAZA Integrative Orthologypolysomal ribosome AT5G64140

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000289 Ribosomal protein S28e
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
17.1.3.1.30 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS28