Gene: AT4G38960

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G38960
  • Transcript Identifier AT4G38960.4
  • Gene Type Coding gene
  • Location Chr4 : 18162300-18162974 : positive

Gene Family Information

  • ID HOM05D000578
  • #Genes/#Species 962/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G38960.4
  • symbol BBX19
  • full_name B-box domain protein 19
  • uniprot C0SVM5

Descriptions

  • Description B-box type zinc finger family protein
  • Computational description B-box type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT2G21320.1); Has 1845 Blast hits to 1358 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 1736; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010100
IDA
Gene Ontologynegative regulation of photomorphogenesis1
GO:0009640
IMP
IBA
Gene Ontologyphotomorphogenesis2 3
GO:0006355
IBA
TAS
Gene Ontologyregulation of transcription, DNA-templated2 4
GO:0010228
IMP
Gene Ontologyvegetative to reproductive phase transition of meristem5
GO:0007623
IEP
Gene Ontologycircadian rhythm6
GO:0045892
IPI, IEP
Gene Ontologynegative regulation of transcription, DNA-templated
GO:0042752
IEP
Gene Ontologyregulation of circadian rhythm

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
IPI
Gene Ontologyprotein binding
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity4
GO:0043621
IPI
Gene Ontologyprotein self-association

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus2
GO:0005737
ISM
Gene Ontologycytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000315 B-box-type zinc finger
Mapman id Description
15.5.1.1 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (BBX-DBB)