Gene: AT4G38460
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G38460
- Transcript Identifier AT4G38460.1
- Gene Type Coding gene
- Location Chr4 : 17994849-17995974 : positive
Gene Family Information
- ID HOM05D000626
- #Genes/#Species 914/100
- Phylogenetic origin
- ID ORTHO05D000824
- #Genes/#Species 593/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G38460.1
- symbol GGR
- Alias AtSSU,SSU,small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase
- uniprot Q39108
Descriptions
- Description geranylgeranyl reductase
- Computational description geranylgeranyl reductase (GGR); INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase 1 (TAIR:AT4G36810.1); Has 14555 Blast hits to 14554 proteins in 2890 species: Archae - 343; Bacteria - 9127; Metazoa - 134; Fungi - 165; Plants - 435; Viruses - 12; Other Eukaryotes - 4339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008299 | IEA | GOA Database | isoprenoid biosynthetic process | |
| GO:0008299 | IEA | InterPro | isoprenoid biosynthetic process | |
| GO:0043693 | IMP | Gene Ontology | monoterpene biosynthetic process | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004659 | IBA | Gene Ontology | prenyltransferase activity | 2 |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 3 |
| GO:0004161 | IDA | Gene Ontology | dimethylallyltranstransferase activity | 3 |
| GO:0004311 | IDA | Gene Ontology | farnesyltranstransferase activity | 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009579 | IEA | GOA Database | thylakoid | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0009507 | IEA | GOA Database | chloroplast | |
| GO:0009507 | IDA, HDA ISM | Gene Ontology | chloroplast | 1 5 |
| GO:0009536 | IEA | GOA Database | plastid | |
| GO:0009535 | IEA | GOA Database | chloroplast thylakoid membrane | |
| GO:0042651 | IDA | Gene Ontology | thylakoid membrane | 6 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |