Gene: AT4G36810

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G36810
  • Transcript Identifier AT4G36810.1
  • Gene Type Coding gene
  • Location Chr4 : 17343513-17344628 : positive

Gene Family Information

  • ID HOM05D000626
  • #Genes/#Species 914/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G36810.1
  • symbol GGPS1
  • Alias AtGGPPS11,AtLSU,GGPPS11,geranyl(geranyl)diphosphate synthase 11,LSU,Large subunit of Heterodimeric geranyl(geranyl)diphosphate synthase
  • uniprot P34802

Descriptions

  • Description geranylgeranyl pyrophosphate synthase 1
  • Computational description geranylgeranyl pyrophosphate synthase 1 (GGPS1); FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: etioplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: Terpenoid synthases superfamily protein (TAIR:AT2G18620.1); Has 16617 Blast hits to 16612 proteins in 2936 species: Archae - 341; Bacteria - 9385; Metazoa - 291; Fungi - 423; Plants - 452; Viruses - 12; Other Eukaryotes - 5713 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008299
IEA
GOA Databaseisoprenoid biosynthetic process
GO:0008299
TAS
Gene Ontologyisoprenoid biosynthetic process1
GO:0008299
IEA
InterProisoprenoid biosynthetic process
GO:0016117
IEA
GOA Databasecarotenoid biosynthetic process
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy2
GO:0043693
IMP
Gene Ontologymonoterpene biosynthetic process3
GO:0045337
IEA
Gene Ontologyfarnesyl diphosphate biosynthetic process
GO:0033386
IEA
Gene Ontologygeranylgeranyl diphosphate biosynthetic process
GO:0033384
IEA
Gene Ontologygeranyl diphosphate biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0004161
IEA
GOA Databasedimethylallyltranstransferase activity
GO:0004161
IDA
Gene Ontologydimethylallyltranstransferase activity4
GO:0004311
IEA
GOA Databasefarnesyltranstransferase activity
GO:0004311
IDA
IBA
Gene Ontologyfarnesyltranstransferase activity1 5
GO:0004659
IBA
Gene Ontologyprenyltransferase activity5
GO:0004337
IEA
Gene Ontologygeranyltranstransferase activity
GO:0005515
IPI
Gene Ontologyprotein binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
Gene Ontologycytosol2
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
IDA
Gene Ontologyplastid2
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast1 6
GO:0009513
IDA
Gene Ontologyetioplast1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR008949 Isoprenoid synthase domain superfamily
IPR000092 Polyprenyl synthetase
Mapman id Description
9.1.3.1.1 Secondary metabolism.terpenoids.isoprenyl diphosphate biosynthesis.geranyl diphosphate synthase complex.catalytic subunit LSU/IDS11
9.1.3.3 Secondary metabolism.terpenoids.isoprenyl diphosphate biosynthesis.isoprenyl diphosphate synthase (IDS)