Gene: AT4G31480

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G31480
  • Transcript Identifier AT4G31480.1
  • Gene Type Coding gene
  • Location Chr4 : 15264145-15267384 : positive

Gene Family Information

  • ID HOM05D002483
  • #Genes/#Species 274/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G31480.1
  • uniprot Q9SV21

Descriptions

  • Description Coatomer, beta subunit
  • Computational description Coatomer, beta subunit; FUNCTIONS IN: clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: male gametophyte, guard cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Coatomer, beta subunit, C-terminal (InterPro:IPR011710), Armadillo-like helical (InterPro:IPR011989), Coatomer, beta subunit (InterPro:IPR016460), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Coatomer, beta subunit (TAIR:AT4G31490.1); Has 2798 Blast hits to 2724 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 1200; Fungi - 640; Plants - 392; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0006886
IEA
Gene Ontologyintracellular protein transport
GO:0006886
IEA
InterProintracellular protein transport
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006891
IBA
Gene Ontologyintra-Golgi vesicle-mediated transport1
GO:0006888
IBA
Gene Ontologyendoplasmic reticulum to Golgi vesicle-mediated transport1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005198
IEA
Gene Ontologystructural molecule activity
GO:0005198
IEA
InterProstructural molecule activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma2
GO:0030126
IBA
IEA
Gene OntologyCOPI vesicle coat1
GO:0030126
IEA
InterProCOPI vesicle coat
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IEA
InterProcytoplasm
GO:0030117
IEA
GOA Databasemembrane coat
GO:0030117
IEA
InterPromembrane coat
GO:0016020
IEA
GOA Databasemembrane
GO:0031410
IEA
GOA Databasecytoplasmic vesicle
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005829
IDA
GOA Databasecytosol
GO:0000139
IEA
GOA DatabaseGolgi membrane
GO:0030663
IEA
GOA DatabaseCOPI-coated vesicle membrane
GO:0005886
HDA
Gene Ontologyplasma membrane3
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal
IPR029446 Coatomer beta subunit, appendage platform domain
IPR016024 Armadillo-type fold
IPR016460 Coatomer beta subunit (COPB1)
IPR011710 Coatomer beta subunit, C-terminal
IPR011989 Armadillo-like helical
Mapman id Description
22.2.1.1.4.1 Vesicle trafficking.Golgi-ER retrograde trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.subunit beta