Gene: AT4G30980

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G30980
  • Transcript Identifier AT4G30980.1
  • Gene Type Coding gene
  • Location Chr4 : 15079489-15081606 : negative

Gene Family Information

  • ID HOM05D001048
  • #Genes/#Species 579/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G30980.1
  • symbol LRL2
  • uniprot Q8S3D5

Descriptions

  • Description LJRHL1-like 2
  • Computational description LJRHL1-like 2 (LRL2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root hair cell development, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: LJRHL1-like 1 (TAIR:AT2G24260.1); Has 3371 Blast hits to 3365 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 43; Plants - 3213; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated1
GO:0080147
IMP
Gene Ontologyroot hair cell development2
GO:0048765
IMP
Gene Ontologyroot hair cell differentiation3
GO:0048767
IGI
Gene Ontologyroot hair elongation3
GO:0048235
IGI
Gene Ontologypollen sperm cell differentiation4
GO:0055046
IGI
Gene Ontologymicrogametogenesis4
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding5
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific5
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)