Gene: AT4G30220

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G30220
  • Transcript Identifier AT4G30220.1
  • Gene Type Coding gene
  • Location Chr4 : 14803100-14804259 : negative

Gene Family Information

  • ID HOM05D000854
  • #Genes/#Species 698/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G30220.1
  • symbol RUXF
  • uniprot Q9SUM2

Descriptions

  • Description small nuclear ribonucleoprotein F
  • Computational description small nuclear ribonucleoprotein F (RUXF); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G14285.1); Has 1186 Blast hits to 1186 proteins in 302 species: Archae - 341; Bacteria - 0; Metazoa - 298; Fungi - 260; Plants - 126; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000387
IEA
Gene Ontologyspliceosomal snRNP assembly
GO:0000387
IEA
InterProspliceosomal snRNP assembly
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IEA
InterProspliceosomal complex
GO:0005685
IBA
Gene OntologyU1 snRNP1
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:0005886
HDA
Gene Ontologyplasma membrane2
GO:0005730
HDA
Gene Ontologynucleolus3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR016487 Sm-like protein Lsm6/SmF
IPR034100 Small nuclear ribonucleoprotein F
IPR010920 LSM domain superfamily
Mapman id Description
16.2.2.6 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-F