Gene: AT4G29730

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G29730
  • Transcript Identifier AT4G29730.1
  • Gene Type Coding gene
  • Location Chr4 : 14559255-14562522 : negative

Gene Family Information

  • ID HOM05D002302
  • #Genes/#Species 294/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G29730.1
  • symbol NFC5
  • Alias MSI5
  • uniprot Q9SU78

Descriptions

  • Description nucleosome/chromatin assembly factor group C5
  • Computational description nucleosome/chromatin assembly factor group C5 (NFC5); CONTAINS InterPro DOMAIN/s: Histone-binding protein RBBP4 (InterPro:IPR022052), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G19520.1); Has 24856 Blast hits to 17343 proteins in 647 species: Archae - 12; Bacteria - 3162; Metazoa - 9403; Fungi - 5971; Plants - 3158; Viruses - 0; Other Eukaryotes - 3150 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010629
IMP
Gene Ontologynegative regulation of gene expression1
GO:0006355
IMP
Gene Ontologyregulation of transcription, DNA-templated2
GO:0043966
IMP
Gene Ontologyhistone H3 acetylation2
GO:0080182
IMP
Gene Ontologyhistone H3-K4 trimethylation2
GO:0098532
IMP
Gene Ontologyhistone H3-K27 trimethylation2
GO:0006325
IEA
GOA Databasechromatin organization

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex4
GO:0035098
IDA
Gene OntologyESC/E(Z) complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR022052 Histone-binding protein RBBP4, N-terminal
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
12.2.1.3 Chromatin organisation.histone chaperone activities.CAF1 histone chaperone complex.component CAF1c/MSI