Gene: AT4G29160
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G29160
- Transcript Identifier AT4G29160.1
- Gene Type Coding gene
- Location Chr4 : 14381019-14382342 : positive
Gene Family Information
- ID HOM05D001726
- #Genes/#Species 375/98
- Phylogenetic origin
- ID ORTHO05D001761
- #Genes/#Species 359/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G29160.1
- symbol SNF7.1
- uniprot Q9SZE4
Descriptions
- Description SNF7 family protein
- Computational description SNF7.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT2G19830.1); Has 1847 Blast hits to 1847 proteins in 245 species: Archae - 2; Bacteria - 29; Metazoa - 703; Fungi - 444; Plants - 428; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016192 | ISS | Gene Ontology | vesicle-mediated transport | 1 |
| GO:0070676 | IDA | Gene Ontology | intralumenal vesicle formation | 2 |
| GO:0006900 | IBA | Gene Ontology | vesicle budding from membrane | 3 |
| GO:0032511 | IBA | Gene Ontology | late endosome to vacuole transport via multivesicular body sorting pathway | 3 |
| GO:0015031 | IEA | GOA Database | protein transport | |
| GO:0007034 | IEA | GOA Database | vacuolar transport | |
| GO:0007034 | IEA | InterPro | vacuolar transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0000815 | ISS, IBA | Gene Ontology | ESCRT III complex | 3 5 |
| GO:0010008 | IDA | Gene Ontology | endosome membrane | 2 |
| GO:0005886 | HDA | Gene Ontology | plasma membrane | 6 |
| GO:0009898 | IBA | Gene Ontology | cytoplasmic side of plasma membrane | 3 |
| GO:0005771 | IBA | Gene Ontology | multivesicular body | 3 |
| GO:0005768 | IEA | GOA Database | endosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005024 | Snf7 family |
| Mapman id | Description |
|---|---|
| 22.4.1.3.2 | Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-III complex.component VPS32/SNF7 |