Gene: AT4G27280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G27280
  • Transcript Identifier AT4G27280.1
  • Gene Type Coding gene
  • Location Chr4 : 13663770-13664162 : negative

Gene Family Information

  • ID HOM05D000893
  • #Genes/#Species 672/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G27280.1
  • uniprot O81831

Descriptions

  • Description Calcium-binding EF-hand family protein
  • Computational description Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: pinoid-binding protein 1 (TAIR:AT5G54490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009733
IDA
Gene Ontologyresponse to auxin1
GO:0071456
HEP
Gene Ontologycellular response to hypoxia2
GO:0080167
IEP
GOA Databaseresponse to karrikin

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005509
IEA
Gene Ontologycalcium ion binding
GO:0005509
IEA
InterProcalcium ion binding
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
ISM
Gene Ontologyplasma membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044205 Calcium-binding protein KIC/PBP1/KRP1
IPR011992 EF-hand domain pair
IPR002048 EF-hand domain
Mapman id Description
35.1 not assigned.annotated