Gene: AT4G25880
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G25880
- Transcript Identifier AT4G25880.1
- Gene Type Coding gene
- Location Chr4 : 13155518-13159078 : positive
Gene Family Information
- ID HOM05D000810
- #Genes/#Species 729/97
- Phylogenetic origin
- ID ORTHO05D003737
- #Genes/#Species 207/90
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G25880.1
- symbol PUM6
- Alias APUM6,pumilio 6
- uniprot Q9C5E7
Descriptions
- Description pumilio 6
- Computational description pumilio 6 (PUM6); FUNCTIONS IN: RNA binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 5 (TAIR:AT3G20250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010608 | IBA | Gene Ontology | posttranscriptional regulation of gene expression | 1 |
| GO:0006417 | IEA | GOA Database | regulation of translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | IDA, HDA IBA | Gene Ontology | mRNA binding | 1 2 3 |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IBA | Gene Ontology | cytoplasm | 1 |
| GO:0009507 | IEA | GOA Database | chloroplast | |
| GO:0009536 | IEA | GOA Database | plastid |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |