Gene: AT4G25560
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G25560
- Transcript Identifier AT4G25560.1
- Gene Type Coding gene
- Location Chr4 : 13052555-13053573 : positive
Gene Family Information
- ID HOM05D000008
- #Genes/#Species 9932/97
- Phylogenetic origin
- ID ORTHO05D003936
- #Genes/#Species 198/84
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G25560.1
- symbol LAF1
- Alias AtMYB18,myb domain protein 18,MYB18,myb domain protein 18
- full_name LONG AFTER FAR-RED LIGHT 1
- uniprot Q9M0K4
Descriptions
- Description myb domain protein 18
- Computational description myb domain protein 18 (MYB18); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 19 (TAIR:AT5G52260.1); Has 8724 Blast hits to 8053 proteins in 477 species: Archae - 0; Bacteria - 8; Metazoa - 744; Fungi - 438; Plants - 5747; Viruses - 4; Other Eukaryotes - 1783 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009639 | IMP | Gene Ontology | response to red or far red light | 1 |
| GO:0010018 | IMP | Gene Ontology | far-red light signaling pathway | 1 |
| GO:0045893 | IDA | Gene Ontology | positive regulation of transcription, DNA-templated | 1 |
| GO:0009585 | IEA | GOA Database | red, far-red light phototransduction | |
| GO:0010017 | IEA | GOA Database | red or far-red light signaling pathway |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 2 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 3 |
| GO:0003677 | IEA | GOA Database | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 1 |
| GO:0016607 | IEA | GOA Database | nuclear speck |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.2.1 | RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB) |