Gene: AT4G25400

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G25400
  • Transcript Identifier AT4G25400.1
  • Gene Type Coding gene
  • Location Chr4 : 12981226-12982335 : positive

Gene Family Information

  • ID HOM05D001263
  • #Genes/#Species 495/85
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G25400.1
  • uniprot Q9STJ7

Descriptions

  • Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  • Computational description basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G51780.1); Has 180 Blast hits to 180 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IBA
IEA
Gene Ontologyregulation of transcription by RNA polymerase II1
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0006355
ISS
TAS
Gene Ontologyregulation of transcription, DNA-templated2 3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
ISS
IEA
Gene OntologyDNA-binding transcription factor activity2
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0000977
IBA
Gene OntologyRNA polymerase II transcription regulatory region sequence-specific DNA binding1
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific1
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0090575
IBA
Gene OntologyRNA polymerase II transcription regulator complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR015660 Achaete-scute transcription factor-related
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)