Gene: AT4G25350
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G25350
- Transcript Identifier AT4G25350.1
- Gene Type Coding gene
- Location Chr4 : 12963382-12966448 : negative
Gene Family Information
- ID HOM05D000508
- #Genes/#Species 1053/99
- Phylogenetic origin
- ID ORTHO05D000371
- #Genes/#Species 1045/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G25350.1
- symbol SHB1
- full_name SHORT HYPOCOTYL UNDER BLUE1
- uniprot Q6R8G6
Descriptions
- Description EXS (ERD1/XPR1/SYG1) family protein
- Computational description SHORT HYPOCOTYL UNDER BLUE1 (SHB1); CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G35350.1); Has 1169 Blast hits to 1111 proteins in 205 species: Archae - 2; Bacteria - 6; Metazoa - 265; Fungi - 425; Plants - 309; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006817 | IEA | GOA Database | phosphate ion transport | |
| GO:0006817 | IBA | Gene Ontology | phosphate ion transport | 1 |
| GO:0035435 | IEA | GOA Database | phosphate ion transmembrane transport | |
| GO:0016036 | IBA | Gene Ontology | cellular response to phosphate starvation | 1 |
| GO:0080113 | IMP | Gene Ontology | regulation of seed growth | 2 |
| GO:0080050 | IMP | Gene Ontology | regulation of seed development | 2 |
| GO:0045793 | IMP | Gene Ontology | positive regulation of cell size | 2 |
| GO:0010468 | IMP | Gene Ontology | regulation of gene expression | 2 |
| GO:0009960 | IMP | Gene Ontology | endosperm development | 2 |
| GO:0010017 | IMP | Gene Ontology | red or far-red light signaling pathway | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015114 | IBA | Gene Ontology | phosphate ion transmembrane transporter activity | 1 |
| GO:0000822 | IBA | Gene Ontology | inositol hexakisphosphate binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005794 | IBA | Gene Ontology | Golgi apparatus | 1 |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0016021 | IEA | InterPro | integral component of membrane | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0005886 | IEA | GOA Database | plasma membrane | |
| GO:0005886 | ISM, IBA | Gene Ontology | plasma membrane | 1 |
| GO:0005737 | IBA | Gene Ontology | cytoplasm | 1 |
| GO:0005802 | IBA | Gene Ontology | trans-Golgi network | 1 |
| GO:0005829 | IDA | Gene Ontology | cytosol | 3 |
| GO:0005634 | IDA | Gene Ontology | nucleus | 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |