Gene: AT4G24260

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G24260
  • Transcript Identifier AT4G24260.1
  • Gene Type Coding gene
  • Location Chr4 : 12577871-12580133 : negative

Gene Family Information

  • ID HOM05D000120
  • #Genes/#Species 2804/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G24260.1
  • symbol GH9A3
  • Alias ATGH9A3,glycosyl hydrolase 9A3,AtKOR3,KOR3
  • uniprot Q9STW8

Descriptions

  • Description glycosyl hydrolase 9A3
  • Computational description glycosyl hydrolase 9A3 (GH9A3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9A1 (TAIR:AT5G49720.1); Has 1666 Blast hits to 1648 proteins in 232 species: Archae - 2; Bacteria - 516; Metazoa - 186; Fungi - 17; Plants - 908; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0030245
IEA
GOA Databasecellulose catabolic process
GO:0000272
IEA
GOA Databasepolysaccharide catabolic process
GO:0008152
IEA
GOA Databasemetabolic process
GO:0071555
IEA
GOA Databasecell wall organization
GO:0009624
IEP
Gene Ontologyresponse to nematode1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0004553
IEA
GOA Databasehydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004553
IEA
InterProhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008810
IEA
Gene Ontologycellulase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005634
ISM
Gene Ontologynucleus
GO:0005886
IDA
IEA
GOA Databaseplasma membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001701 Glycoside hydrolase family 9
IPR008928 Six-hairpin glycosidase superfamily
IPR012341 Six-hairpin glycosidase-like superfamily
Mapman id Description
21.1.1.1.2 Cell wall organisation.cellulose.cellulose synthase complex (CSC).CSC components.class-A endo-1,4-beta-glucanase (KOR)