Gene: AT4G21980
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G21980
- Transcript Identifier AT4G21980.1
- Gene Type Coding gene
- Location Chr4 : 11655913-11656809 : positive
Gene Family Information
- ID HOM05D000698
- #Genes/#Species 816/99
- Phylogenetic origin
- ID ORTHO05D000839
- #Genes/#Species 588/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G21980.1
- symbol APG8A
- Alias ATG8A,AUTOPHAGY-RELATED 8A
- full_name AUTOPHAGY 8A
- uniprot Q8LEM4
Descriptions
- Description Ubiquitin-like superfamily protein
- Computational description AUTOPHAGY 8A (APG8A); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G04620.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006995 | IBA | GOA Database | cellular response to nitrogen starvation | |
| GO:0015031 | IEA | GOA Database | protein transport | |
| GO:0006914 | IEA | GOA Database | autophagy | |
| GO:0006914 | ISS | Gene Ontology | autophagy | 1 |
| GO:0050832 | IEP | Gene Ontology | defense response to fungus | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 3 |
| GO:0019786 | ISS | Gene Ontology | Atg8-specific protease activity | 1 |
| GO:0019779 | ISS | Gene Ontology | Atg8 activating enzyme activity | 1 |
| GO:0019776 | ISS | Gene Ontology | Atg8 ligase activity | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0061908 | IPI | Gene Ontology | phagophore | 4 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA NAS | Gene Ontology | cytoplasm | 5 |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0031410 | IEA | GOA Database | cytoplasmic vesicle | |
| GO:0005874 | IEA | GOA Database | microtubule | |
| GO:0005773 | IEA | GOA Database | vacuole | |
| GO:0000421 | IEA | GOA Database | autophagosome membrane | |
| GO:0005774 | IEA | GOA Database | vacuolar membrane | |
| GO:0005856 | IEA | GOA Database | cytoskeleton | |
| GO:0005776 | IDA, IPI | Gene Ontology | autophagosome | 4 5 |
| GO:0009507 | ISM | Gene Ontology | chloroplast | |
| GO:0005775 | NAS | Gene Ontology | vacuolar lumen |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 19.3.3.4.1 | Protein homeostasis.autophagy.phagophore expansion.ATG8-phosphatidylethanolamine conjugation system.ubiquitin-fold protein (ATG8) |