Gene: AT4G18130

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G18130
  • Transcript Identifier AT4G18130.1
  • Gene Type Coding gene
  • Location Chr4 : 10042312-10045948 : negative

Gene Family Information

  • ID HOM05D001060
  • #Genes/#Species 575/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G18130.1
  • symbol PHYE
  • uniprot P42498

Descriptions

  • Description phytochrome E
  • Computational description phytochrome E (PHYE); FUNCTIONS IN: protein histidine kinase activity, G-protein coupled photoreceptor activity, signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 25391 Blast hits to 25044 proteins in 3724 species: Archae - 289; Bacteria - 19481; Metazoa - 8; Fungi - 476; Plants - 4006; Viruses - 9; Other Eukaryotes - 1122 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0018298
IEA
GOA Databaseprotein-chromophore linkage
GO:0018298
IEA
InterProprotein-chromophore linkage
GO:0009903
ISO
PLAZA Integrative Orthologychloroplast avoidance movement Pp3c25_2610
GO:0009584
IEA
Gene Ontologydetection of visible light
GO:0009584
IEA
InterProdetection of visible light
GO:0017006
IEA
Gene Ontologyprotein-tetrapyrrole linkage
GO:0017006
IEA
InterProprotein-tetrapyrrole linkage
GO:0009585
IEA
Gene Ontologyred, far-red light phototransduction
GO:0009585
IEA
InterProred, far-red light phototransduction
GO:0007165
IEA
GOA Databasesignal transduction
GO:0007165
IEA
InterProsignal transduction
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0050896
IEA
GOA Databaseresponse to stimulus
GO:0000160
IEA
GOA Databasephosphorelay signal transduction system

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042803
IEA
Gene Ontologyprotein homodimerization activity
GO:0042803
IEA
InterProprotein homodimerization activity
GO:0009881
IEA
GOA Databasephotoreceptor activity
GO:0009881
IEA
InterProphotoreceptor activity
GO:0000155
IEA
Gene Ontologyphosphorelay sensor kinase activity
GO:0000155
IEA
InterProphosphorelay sensor kinase activity
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0005515
IEA
InterProprotein binding
GO:0004673
ISS
Gene Ontologyprotein histidine kinase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm Pp3c25_2610
GO:0005634
IBA
Gene Ontologynucleus2
GO:0005886
ISM
Gene Ontologyplasma membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013654 PAS fold-2
IPR044767 Phytochrome A/B/C/D/E-like, histidine-kinase-related domain
IPR000014 PAS domain
IPR029016 GAF-like domain superfamily
IPR003018 GAF domain
IPR035965 PAS domain superfamily
IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
IPR036890 Histidine kinase/HSP90-like ATPase superfamily
IPR012129 Phytochrome A/B/C/D/E
IPR013515 Phytochrome, central region
IPR013767 PAS fold
IPR003594 Histidine kinase/HSP90-like ATPase
IPR043150 Phytochrome, PHY domain
IPR001294 Phytochrome
Mapman id Description
26.1.1.1 External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)