Gene: AT4G14960
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G14960
- Transcript Identifier AT4G14960.2
- Gene Type Coding gene
- Location Chr4 : 8548769-8550319 : negative
Gene Family Information
- ID HOM05D000349
- #Genes/#Species 1356/100
- Phylogenetic origin
- ID ORTHO05D000620
- #Genes/#Species 732/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G14960.2
- symbol TUA6
- full_name Tubulin alpha-6
- uniprot P29511
Descriptions
- Description Tubulin/FtsZ family protein
- Computational description TUA6; FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; INVOLVED IN: response to salt stress, microtubule cytoskeleton organization, cellular response to gravity; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-2 chain (TAIR:AT1G50010.1); Has 22344 Blast hits to 22275 proteins in 4636 species: Archae - 4; Bacteria - 22; Metazoa - 4264; Fungi - 13337; Plants - 1462; Viruses - 0; Other Eukaryotes - 3255 (source: NCBI BLink).
- Computational description TUA6; FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; INVOLVED IN: response to salt stress, microtubule cytoskeleton organization, cellular response to gravity; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-2 chain (TAIR:AT1G50010.1); Has 22664 Blast hits to 22566 proteins in 4681 species: Archae - 4; Bacteria - 25; Metazoa - 4398; Fungi - 13427; Plants - 1532; Viruses - 0; Other Eukaryotes - 3278 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000226 | IMP IBA | Gene Ontology | microtubule cytoskeleton organization | 1 2 |
| GO:0007017 | IEA | Gene Ontology | microtubule-based process | |
| GO:0007017 | IEA | InterPro | microtubule-based process | |
| GO:0071258 | IMP | Gene Ontology | cellular response to gravity | 3 |
| GO:0000278 | IBA | Gene Ontology | mitotic cell cycle | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005525 | IEA | GOA Database | GTP binding | |
| GO:0005525 | IBA | Gene Ontology | GTP binding | 2 |
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0003924 | IEA | Gene Ontology | GTPase activity | |
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0005200 | ISS, IBA IEA | Gene Ontology | structural constituent of cytoskeleton | 2 4 |
| GO:0005200 | IEA | InterPro | structural constituent of cytoskeleton | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 5 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | IDA | GOA Database | plasmodesma | |
| GO:0009506 | HDA | Gene Ontology | plasmodesma | 6 |
| GO:0005874 | IEA | GOA Database | microtubule | |
| GO:0005874 | IDA IBA | Gene Ontology | microtubule | 2 7 |
| GO:0005874 | IEA | InterPro | microtubule | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | ISM, IBA | Gene Ontology | cytoplasm | 2 |
| GO:0005856 | IEA | GOA Database | cytoskeleton | |
| GO:0005618 | IDA | GOA Database | cell wall | |
| GO:0005773 | IDA | GOA Database | vacuole | |
| GO:0005773 | HDA | Gene Ontology | vacuole | 8 |
| GO:0005730 | IDA | GOA Database | nucleolus | |
| GO:0005730 | HDA | Gene Ontology | nucleolus | 9 |
| GO:0005886 | IDA | GOA Database | plasma membrane | |
| GO:0005886 | HDA | Gene Ontology | plasma membrane | 10 |
| GO:0005829 | IDA | GOA Database | cytosol | |
| GO:0005829 | HDA | Gene Ontology | cytosol | 11 |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0045298 | IDA | Gene Ontology | tubulin complex | 7 |
| GO:0009505 | HDA | Gene Ontology | plant-type cell wall | 12 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR003008 | Tubulin/FtsZ, GTPase domain |
| IPR036525 | Tubulin/FtsZ, GTPase domain superfamily |
| IPR037103 | Tubulin/FtsZ-like, C-terminal domain |
| IPR002452 | Alpha tubulin |
| IPR000217 | Tubulin |
| IPR023123 | Tubulin, C-terminal |
| IPR018316 | Tubulin/FtsZ, 2-layer sandwich domain |
| IPR008280 | Tubulin/FtsZ, C-terminal |
| Mapman id | Description |
|---|---|
| 20.1.1.1 | Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component alpha-Tubulin |