Gene: AT4G12420

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G12420
  • Transcript Identifier AT4G12420.2
  • Gene Type Coding gene
  • Location Chr4 : 7349941-7352868 : negative

Gene Family Information

  • ID HOM05D000201
  • #Genes/#Species 1953/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G12420.2
  • symbol SKU5
  • uniprot Q9SU40

Descriptions

  • Description Cupredoxin superfamily protein
  • Computational description SKU5; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: cell tip growth; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 2 (TAIR:AT5G51480.1); Has 6156 Blast hits to 6132 proteins in 1213 species: Archae - 8; Bacteria - 2095; Metazoa - 284; Fungi - 2301; Plants - 1268; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).
  • Computational description SKU5; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: cell tip growth; LOCATED IN: plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 2 (TAIR:AT5G51480.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009932
IMP
Gene Ontologycell tip growth1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IBA
Gene Ontologyoxidoreductase activity2
GO:0016491
IEA
InterProoxidoreductase activity
GO:0005507
IEA
Gene Ontologycopper ion binding
GO:0005507
IEA
InterProcopper ion binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031225
IEA
GOA Databaseanchored component of membrane
GO:0031225
TAS
Gene Ontologyanchored component of membrane3
GO:0005576
IEA
GOA Databaseextracellular region
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0016020
IEA
GOA Databasemembrane
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma4
GO:0048046
IDA
GOA Databaseapoplast
GO:0048046
HDA
Gene Ontologyapoplast5
GO:0005774
IDA
GOA Databasevacuolar membrane
GO:0005886
IEA
GOA Databaseplasma membrane
GO:0005886
IDA, HDA
Gene Ontologyplasma membrane1 6
GO:0005618
IEA
GOA Databasecell wall
GO:0005618
HDA
Gene Ontologycell wall7
GO:0046658
IDA
IBA
Gene Ontologyanchored component of plasma membrane2 8
GO:0005829
HDA
RCA
Gene Ontologycytosol9 10
GO:0000325
HDA
Gene Ontologyplant-type vacuole11
GO:0009505
IDA
Gene Ontologyplant-type cell wall1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011707 Multicopper oxidase, N-termianl
IPR045087 Multicopper oxidase
IPR008972 Cupredoxin
IPR001117 Multicopper oxidase, type 1
IPR034273 Ascorbate oxidase homologue, first cupredoxin domain
IPR011706 Multicopper oxidase, C-terminal
Mapman id Description
50.1.10 Enzyme classification.EC_1 oxidoreductases.EC_1.10 oxidoreductase acting on diphenol or related substance as donor