Gene: AT4G12350
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G12350
- Transcript Identifier AT4G12350.1
- Gene Type Coding gene
- Location Chr4 : 7324912-7326636 : positive
Gene Family Information
- ID HOM05D000008
- #Genes/#Species 9932/97
- Phylogenetic origin
- ID ORTHO05D000005
- #Genes/#Species 8869/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G12350.1
- symbol MYB42
- Alias AtMYB42,myb domain protein 42
- uniprot Q9SPG1
Descriptions
- Description myb domain protein 42
- Computational description myb domain protein 42 (MYB42); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 85 (TAIR:AT4G22680.1); Has 8783 Blast hits to 8115 proteins in 472 species: Archae - 0; Bacteria - 0; Metazoa - 778; Fungi - 398; Plants - 5939; Viruses - 6; Other Eukaryotes - 1662 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | TAS | Gene Ontology | regulation of transcription, DNA-templated | 1 |
| GO:2000652 | IMP, IGI | Gene Ontology | regulation of secondary cell wall biogenesis | 2 3 |
| GO:0009094 | IGI | Gene Ontology | L-phenylalanine biosynthetic process | 3 |
| GO:0045893 | IDA | Gene Ontology | positive regulation of transcription, DNA-templated | 3 |
| GO:1901141 | IGI | Gene Ontology | regulation of lignin biosynthetic process | 3 |
| GO:2000762 | IGI | Gene Ontology | regulation of phenylpropanoid metabolic process | 3 |
| GO:0030154 | IBA | Gene Ontology | cell differentiation | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IDA ISS | Gene Ontology | DNA-binding transcription factor activity | 1 3 |
| GO:0000976 | IPI IBA | Gene Ontology | transcription cis-regulatory region binding | 4 5 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM, IBA | Gene Ontology | nucleus | 2 4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.2.1 | RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB) |