Gene: AT4G10340

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G10340
  • Transcript Identifier AT4G10340.1
  • Gene Type Coding gene
  • Location Chr4 : 6408200-6409496 : positive

Gene Family Information

  • ID HOM05D000133
  • #Genes/#Species 2666/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G10340.1
  • symbol LHCB5
  • uniprot Q9XF89

Descriptions

  • Description light harvesting complex of photosystem II 5
  • Computational description light harvesting complex of photosystem II 5 (LHCB5); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, nonphotochemical quenching; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2360 Blast hits to 2295 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2013; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015979
IEA
GOA Databasephotosynthesis
GO:0015979
IMP
Gene Ontologyphotosynthesis1
GO:0018298
IEA
GOA Databaseprotein-chromophore linkage
GO:0009765
IEA
GOA Databasephotosynthesis, light harvesting
GO:0009765
IEA
InterProphotosynthesis, light harvesting
GO:0010196
IMP
Gene Ontologynonphotochemical quenching1
GO:0010207
IMP
Gene Ontologyphotosystem II assembly2
GO:0009768
IBA
Gene Ontologyphotosynthesis, light harvesting in photosystem I3
GO:0009416
IBA
Gene Ontologyresponse to light stimulus3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0019904
IPI
GOA Databaseprotein domain specific binding
GO:0016168
IEA
GOA Databasechlorophyll binding
GO:0016168
ISS
Gene Ontologychlorophyll binding
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0003729
IDA
Gene OntologymRNA binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast6
GO:0009535
IDA
IEA
GOA Databasechloroplast thylakoid membrane
GO:0009535
HDA
IBA
Gene Ontologychloroplast thylakoid membrane3 7
GO:0010287
IDA
GOA Databaseplastoglobule
GO:0010287
HDA
IBA
Gene Ontologyplastoglobule3 8
GO:0009579
IDA
IEA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid9
GO:0009534
IDA
GOA Databasechloroplast thylakoid
GO:0009534
HDA
Gene Ontologychloroplast thylakoid10
GO:0009523
IEA
GOA Databasephotosystem II
GO:0009522
IEA
GOA Databasephotosystem I
GO:0009536
IEA
GOA Databaseplastid
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0009533
IDA
Gene Ontologychloroplast stromal thylakoid
GO:0009783
IMP
Gene Ontologyphotosystem II antenna complex11
GO:0042651
IDA
Gene Ontologythylakoid membrane4
GO:0005829
HDA
Gene Ontologycytosol12
GO:0009517
IDA
Gene OntologyPSII associated light-harvesting complex II13

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022796 Chlorophyll A-B binding protein
IPR001344 Chlorophyll A-B binding protein, plant and chromista
IPR023329 Chlorophyll a/b binding domain superfamily
Mapman id Description
1.1.1.1.3 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.component LHCb5