Gene: AT4G05360
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G05360
- Transcript Identifier AT4G05360.1
- Gene Type Coding gene
- Location Chr4 : 2728204-2732337 : positive
Gene Family Information
- ID HOM05D012795
- #Genes/#Species 13/4
- Phylogenetic origin
- ID ORTHO05D014047
- #Genes/#Species 15/4
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G05360.1
- uniprot Q9M0V9
Descriptions
- Description Zinc knuckle (CCHC-type) family protein
- Computational description Zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: nuclear chromosome; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: Rad21/Rec8-like family protein (TAIR:AT3G59550.1); Has 149 Blast hits to 143 proteins in 40 species: Archae - 0; Bacteria - 8; Metazoa - 14; Fungi - 18; Plants - 86; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0007130 | IBA | Gene Ontology | synaptonemal complex assembly | 1 |
| GO:0007064 | IBA | Gene Ontology | mitotic sister chromatid cohesion | 1 |
| GO:1990414 | IBA | Gene Ontology | replication-born double-strand break repair via sister chromatid exchange | 1 |
| GO:0007062 | IEA | GOA Database | sister chromatid cohesion | |
| GO:0007062 | IEA | InterPro | sister chromatid cohesion |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | Gene Ontology | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | Gene Ontology | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003682 | IBA | Gene Ontology | chromatin binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034990 | IBA | Gene Ontology | nuclear mitotic cohesin complex | 1 |
| GO:0034991 | IBA | Gene Ontology | nuclear meiotic cohesin complex | 1 |
| GO:0000795 | IBA | Gene Ontology | synaptonemal complex | 1 |
| GO:0008278 | IEA | GOA Database | cohesin complex | |
| GO:0008278 | IEA | InterPro | cohesin complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |